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Broad set of pathways extracted from msigdbr database and formatted as a list, with names being gene set names and values being vectors of genes in a given gene set.

Usage

GSEA_pathways

Format

GSEA_pathways

A list with 10,481 gene sets

Details

Includes Human MSigDB Collections:

  • C2CP: curated gene sets, canonical pathways

  • C5GO: ontology gene sets, Gene Ontology gene sets

  • BP: GO Biological Process ontology

  • CC: GO Cellular Component ontology

  • MF: GO Molecular Function ontology

  • H: hallmark gene sets