airway package data run through DESeq2 to analyze differential gene expression between dexamethasone treated and untreated airway smooth muscle cells. Original gene names converted from Ensembl ID to HGNC symbol and filtered to protein-coding only through the BioMart database.
Format
airway_deseq_res
A data frame with 16,460 rows and 9 columns:
- ensembl_gene_id, hgnc_symbol
Gene names in Ensembl ID and HGNC symbol format
- baseMean
Average of normalized count values, dividing by size factors, taken over all samples
- log2FoldChange, lfcSE
Effect size estimate, on log base 2 scale and its standard error
- stat
Value of test statistic
- pvalue, padj
P-value and adjusted P-value
- sign_log_p
Log base 2 of p-value multiplied by sign
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