Get log(x+1) protein coding gene expression matrix

Get log(x+1) protein coding gene expression matrix

Usage

get_log_coding_geneexp(
  exp,
  base = 2,
  pc_genes = Rubrary::get_PC_genes(),
  savename = NULL
)

Arguments

exp

df/string; samples as columns, genes as rows

base

integer; log transformation base

pc_genes

char vector; list of coding genes to filter by

savename

string; filename to save output as

Value

Log(x+1) transformed protein coding only gene expression dataframe