Plot categorical percentile rank comparison between two GSEA squared signatures

Usage

plot_GSEAsq_density(
  GSEAsq_df1,
  GSEAsq_df2,
  name1,
  name2,
  plot_pval = TRUE,
  cat_order = NULL,
  title = "GSEA Squared",
  colors = c("firebrick", "lightslateblue"),
  rug = TRUE,
  savename = NULL,
  plot_fmt = "png",
  height = 8,
  width = 8
)

Arguments

GSEAsq_df1: df/string; "gsea_squared-df.txt" df or path for GSEAsq result 1
GSEAsq_df2: df/string; "gsea_squared-df.txt" df or path for GSEAsq result 2
name1: string; descriptor for GSEAsq result 1
name2: string; descriptor for GSEAsq result 2
plot_pval: logical; TRUE to include KS p-value per category in plot
cat_order: vector; desired order of GSEAsq categories
title: string; overall plot title
colors: vector; first color to signify result 1, second for result 2
rug: logical; TRUE for rugplot below density plot
savename: string; filepath to save outputs under (no extension)
plot_fmt: string; file extension to save plot as
height: numeric; plot height
width: numeric; plot width

Value

facet wrapped ggplot object